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Department of

Chemistry and Biochemistry

Publications

Publications 1999 - present

USD Undergraduate Authors and Co-Authors denoted by *

  • Wallert M.A. and Provost J.J. Integrating standard operating procedures and industry notebook standards to evaluate students in laboratory courses. Biochemistry and Molecular Biology Education 2014. 42(1): 41 – 49.
  • L. N. Hawkins,# M. J. Baril,* N. Sedehi,* M. M. Galloway,# D. O. De Haan, G. P. Schill, M. A. Tolbert, “Formation of semi-solid, oligomerized aqueous SOA: cloud and aerosol lab simulations,” Environ. Sci. Technol. (in press, 2014) doi: 10.1021/es4049626.
  • G. P. Schill, D. O. De Haan, M. A. Tolbert, “Heterogeneous ice nucleation on simulated secondary organic aerosol,” Environ. Sci. Technol. 48 (3) 1675-1682 (2014) doi: 10.1021/es4046428.
  • M. H. Powelson,* B. M. Espelien,* L. N. Hawkins,# M. M. Galloway,# D. O. De Haan, “Brown carbon formation by aqueous-phase aldehyde reactions with amines and ammonium sulfate,” Environ. Sci. Technol. 48 (2) 985-993 (2014) doi: 10.1021/es4038325.
  • Medina, C.; Carter, K. P.; Miller, M.; Clark, T. B.; O’Neil, G. W. “Stereocontrolled Synthesis of 1,3-Diols from Enones: Cooperative Lewis Base-Mediated Intramolecular Carbonyl Hydrosilylations” J. Org. Chem. 2013, 78, 9093–9101.
  • Roeklein-Canfield, J., Wright, A.W., Provost J.J., and Bell, E.B., Essential Concepts & Underlying Theories from Physics, Chemistry, and Mathematics for the Molecular Life Sciences, In Press BAMBED 2013.
  • Kua, J.; Avila, J. E.; Lee, C. J.; Smith, W. D. J. Phys. Chem. A, 2013, 117, 12658-12667. "Mapping the Kinetic and Thermodynamic Energy Landscape of Formaldehyde Oligomerization under Neutral Conditions."
  • “Improving the compostability of natural fiber-reinforced thermoset composites with a tertiary oil phase,” T. Ngo, C. Lambert, L. Benz, M. Chau, Polymer-Plastics Technology and Engineering, 52(7) 710, (2013).
  • "Adsorption of dibenzothiophene and fluorene on TiO2(110) and supported Ag clusters," E.R. Webster, A. Park, M. B. Stratton, V. C. Park, A. M. Mosier, R. S. Shine and L. Benz, Energy and Fuels, 27(11) 6575, (2013).
  • Mitchell R. Malachowski, “Connecting Undergraduate Research to an Institution’s Core Mission,” chapter in, “How to Get Started in STEM Research with Undergraduates,” Ed.; Merle Schuh, Council on Undergraduate Research, 2013.
  • Gregory D. Severn and James P. Bolender “A Note on the Gyromagnetic Properties of Hydrogens.”, submitted to American Journal of Physics, May 2012, revised, accepted February 5, 2013.
  • N. Sedehi,* H. Takano,* V. A. Blasic,* K. A. Sullivan,* and D. O. De Haan, “Temperature- and pH-dependent aqueous-phase kinetics of the reactions of glyoxal and methylglyoxal with atmospheric amines and ammonium sulfate,” Atmos. Environ. 77 656-663 (2013) doi: 10.1016/j.atmosenv.2013.05.070.
  • J. Kua, M. M. Galloway,# K. D. Millage,* J. Avila,* and D. O. De Haan, “Glycolaldehyde Monomer and Oligomer Equilibria in Aqueous Solution: Comparing Computational Chemistry and NMR Data," J. Phys. Chem. A 117 (14) 2997 – 3008 (2013) doi: 10.1021/jp312202j.
  • “Surprises from an Unusual CLC Homolog,” Phillips, S.,* Brammer, A.E., Rodriguez, L.*, Lim, H-H., Stary-Weinzinger, A., Matulef, K., Biophysical Journal 103, L44-L46 (2012).
  • Mitchell R. Malachowski, “Living in Parallel Universes: The Great Faculty Divide between Product-Oriented and Process-Oriented Scholarship,” chapter in “Faculty Support and Undergraduate Research: Innovations in Faculty Role Definition, Workload, and Reward,” Ed. Nancy Hensel and Elizabeth Paul, Jossey-Bass, 2012.
  • “A Fundamental Investigation of the Interaction of Petroleum-Relevant Organosulfur Compounds with TiO2(110)”, Benz, Lauren; Park, Aileen; Corey, Jenelle R.; Mezher, Michelle P.; Park, Victoria, Langmuir, 28, 10209, (2012).
  • “Iridium-Catalyzed, Substrate-Directed C–H Borylation Reactions of Benzylic Amines”, Roering, A.J.; Hale, L.V.; Squier, P.A.; Ringgold, M.A.; Wiederspan, E.R.; Clark, T.B. Organic Letters, 14, 3558-3561, (2012).
  • “Cobalt substitution supports an inner-sphere electron transfer mechanism for oxygen reduction in pea seedling amine oxidase”, Mills, Stephen A.; Brown, Doreen E.; Dang, Kaitlyn; Sommer, Dayn; Bitsimis, Alexandra; Nguyen, Jennifer; Dooley, David M., Journal of Biological Inorganic Chemistry (2012), 17(4), 507-515.
  • "Chemical modification of organosolv lignin using boronic acid-containing reagents", Korich, Andrew L.; Fleming, Andrew B.; Walker, Amanda R.; Wang, Jifu; Tang, Chuanbing; Iovine, Peter M., From Polymer (2012), 53(1), 87-93.
  • "Heterogeneous Glyoxal Oxidation: A Potential Source of Secondary Organic Aerosol", Connelly Brandon Michael; De Haan David O; Tolbert Margaret A., The Journal of Physical Chemistry. A (2012) DOI:10.1021/jp211502e.
  • "Optical Properties of the Products of α-Dicarbonyl and Amine Reactions in Simulated Cloud Droplets", Zarzana, Kyle J.; De Haan, David O.; Freedman, Miriam A.; Hasenkopf, Christa A.; Tolbert, Margaret A., From Environmental Science & Technology (2012), 46(9), 4845-4851.
  • "Employing Magnetic Levitation To Monitor Reaction Kinetics and Measure Activation Energy", Benz, Lauren; Cesafsky, Karen E.; Le, Tran; Park, Aileen; Malicky, David, From Journal of Chemical Education (2012), 89(6), 776-779.  
  • "Klentaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry", Betz, K.; Malyshev, D.A.; Lavergne, T.; Welte, W.; Diederichs, K.; Dwyer, T.J.; Ordoukhanian, P.; Romesberg, F.E.; Marx, A., Nature Chemical Biology, 8, 612–614, (2012).
  • “Replication Without H-Bonds: The Structure of a DNA Polymerase Replicating an Expanded Genetic Alphabet”, Betz, K.; Malyshev, D. A.; Lavergne, T.; Welte, W.; Diederichs, K.; Dwyer, T.J.; Ordoukhanian, P.; Romesberg, F.E.; Marx, A., Nature Chemical Biology, pending final acceptance for publication.
  • Mitchell R. Malachowski, Jordan M. Thomas, Stephanie Kishbaugh, Arnold L. Rheingold, Curtis E. Moore “Synthesis and Characterization of Divalent Metal Complexes formed from Tetradentate Biphenyl-based Ligands ”, submitted to the Journal of the Chemical Society, Dalton Transactions.
  • D. O. De Haan, L. N. Hawkins,* J. A. Kononenko,* J. J. Turley,* A. L. Corrigan,* M. A. Tolbert, J. L. Jimenez, “Formation of nitrogen-containing oligomers by methylglyoxal and amines in simulated evaporating cloud droplets.”  Environ. Sci. Technol. 45 (3) 984-991 (2011).
  • "Primordial Ocean Chemistry and its Compatibility with the RNA World", Kua, Jeremy; Bada, Jeffrey L., From Origins of Life and Evolution of iospheres (2011), 41(6), 553-558.
  • "Synthesis and characterization of an unsymmetrical cobalt(III) active site analogue of nitrile hydratase", Angelosante, Jennifer K.; Schopp, Lauren M.; Lewis, Breia J.; Vitalo, Amber D.; Titus, Dustin T.; Swanson, Rebecca A.; Stanley, April N.; Abolins, Brendan P.; Frome, Michelle J.; Cooper, Lisa E.; et al, From JBIC, Journal of Biological Inorganic Chemistry (2011), 16(6), 937-947.
  • "Thermodynamics and Kinetics of Imidazole Formation from Glyoxal, Methylamine, and Formaldehyde: A Computational Study", Kua, Jeremy; Krizner, Hadley E.; De Haan, David O., From Journal of Physical Chemistry A (2011), 115(9), 1667-1675.
  • *Query, I. P.; *Squier, P. A.; %Larson, E. M.; *Isley, N. A.; Clark, T. B.“Alkoxide_Catalyzed Reduction of Ketones with Pinacolborane”, J. Org. Chem. 2011, 76, 6452-6456.
  • “Enabling Bifunctionality and Hemilability of N-Heteroaryl NHC Complexes”, Specht, Z.; Cortes-Llamas, S.; Tran, H.; van Niekerk, C.; Rancudo, K.; Golen, J.; Moore, C.; Rheingold, A.; Dwyer, T.J.; Grotjahn, D., Chemistry - A European Journal, 17, 6606-6609 (2011).
  • Wang, Jifu; Yao, Kejian; Korich, Andrew L.; Li, Shigeng; Ma, Shuguo; Ploehn, Harry J.; Iovine, Peter M.; Wang, Chunpeng; Chu, Fuxiang; Tang, Chuanbing, “Combining Renewable Gum Rosin and Lignin: Towards Hydrophobic Polymer Composites by Controlled,Polymerization“ J. Polym. Sci. Part A: Polym. Chem. 2011, 49 (17), 3728-3738. DOI: 10.1002/pola.24809.
  • Kang, Youn K.; Iovine, Peter M.; Therien, Michael J. “Electron Transfer Reactions of Rigid, Cofacially Compressed, π-Stacked Porphyrin-Bridge-Quinone Systems“ Coord. Chem. Rev. 2011, 255 (7-8), 804-824.
  • Tong, Xiao; Benz, Lauren; Chretien, Steeve; Metiu, Horia; Bowers, Michael T.; Buratto, Steven K. “Direct Visualization of Water-Induced Relocation of Au Atoms from Oxygen Vacancies on a TiO2(110).” Surface Journal of Physical Chemistry C (2010), 114(9), 3987-3990.  987-3990.
  • Haubrich, Jan; Quiller, Ryan G.; Benz, Lauren; Liu, Zhi; Friend, Cynthia M. “In Situ Ambient Pressure Studies of the Chemistry of NO2 and Water on Rutile TiO2(110) “Langmuir(2010),26(4),2445-2451.
  • Cryder, Jessica* L.; Killgore, Andrew J.; Moore, Curtis; Golen, James A.; Rheingold, Arnold L.; Daley, Christopher J. A. “Novel metal complexes containing a chiral trinitrogen isoindoline-based pincer ligand: in situ synthesis and structural characterization.” Dalton Transactions (2010), 39(44), 10671-10677. 
  • Malyshev, Denis A.; Pfaff, Danielle A.*; Ippoliti, Shannon I.*; Hwang, Gil Tae; Dwyer, Tammy J.; Romesberg, Floyd E. “Solution Structure, Mechanism of Replication, and Optimization of an Unnatural Base Pair.” Chemistry--A European Journal(2010),16(42),12650-12659, S12650/1-S12650/28.
  • Kahn, James*; Dutnall, Robert N.; Matulef, Kimberly; Plesniak, Leigh A. “Measurement of kon without a rapid-mixing device. ”Biochemistry and Molecular Biology Education(2010),38(4),238-241.
  • Anderson, Megan; Huh, Joon H.; Ngo, Thien; Lee, Alice; Hernandez, Genaro; Pang, Joy; Perkins, Jennifer; Dutnall, Robert N. “Co-expression as a convenient method for the production and purification of core histones in bacteria.” Protein Expression & Purification(2010),72(2),194-204.
  • Malachowski, Mitchell R.; Grau, Michelle F.*; Thomas, Jordan M.*; Rheingold, Arnold L.; Moore, Curtis E. “Heterometallic complexes derived from ruthenocene-functionalized dipyrromethenes.” Inorganica Chimica Acta(2010),364(1),132-137.
  • Korich, Andrew L.; Iovine, Peter M. “Boroxine Chemistry and Applications: A Perspective” Dalton Trans., 2010, 39, 1423-1431.
  • Korich, Andrew L.; Walker, Amanda; Stevens, Caitlin; Hincke, Christopher.; Iovine, Peter M.“Synthesis, Characterization, and Star Polymer Formation of Boronic Acid End-Functionalized Polycaprolactone”J. Polym. Sci. Part A: Polym. Chem. 2010, 48 (24), 5767-5774.
  • Malachowski, Mitchell R. “Is CUR Helping Diminish the Importance of Teaching at Predominately Undergraduate Institutions?” Council on Undergraduate Research Quarterly, 31, 32-36, 2010.
  • J. L. Axson, K. Takahashi, D. O. De Haan and V. Vaida, “Gas-Phase Water Mediated Equilibrium Study Between Methylglyoxal and its Geminal Diol.” Proc. Nat. Acad. Sci. 107 (15) 6687-6692 (2010), doi: 10.1073/pnas.0912121107.
  • De Haan, D. O.; Hawkins, L. N.; Kononenko, J. A.; Turley, J. J.; Corrigan, A. L.; Tolbert, M. A.; Jimenez, J. L., Formation of nitrogen-containing oligomers by methylglyoxal and amines in simulated evaporating cloud droplets. Environ. Sci. Technol. 2010, in press.
  • Cravens, Shannen L.*; Navapanich, Alyssa C.*; Geierstanger, Bernhard H.; Tahmassebi, Deborah C.; Dwyer, Tammy J. “NMR Solution Structure of a DNA-Actinomycin D Complex Containing a Non-Hydrogen-Bonding Pair in the Binding Site.” Journal of the American Chemical Society (2010), 132(49), 17588-17598.
  • Malyshev; D. A., Pfaff, D. A.*; Ippoliti, S. L.*; Hwang, G. T.; Dwyer, T. J.; Romesberg, F. E.; Chemistry – A European Journal , 16(42),12650–12659 (2010). “Solution Structure, Mechanism of Replication, and Optimization of an Unnatural Base Pair.”
  • Kua, J.; Daly, R. C.*; Tomlin, K. M.*; van Duin, A. C. T.; Brill, T. B.; Beal, R. W.; Rheingold, A. L. J. Phys. Chem. A, 2009, 113, 11443-11453.
    "Self-assembly of SbCl3 and 1,4-dioxane: A cubic structure connected by very weak bonds."
  • David O. De Haan, Ashley L. Corrigan,* Margaret A. Tolbert, Jose L. Jimenez, Stephanie E. Wood,* Jacob J. Turley,* “Secondary organic aerosol formation by self-reactions of methylglyoxal and glyoxal in evaporating droplets.”
    Environ. Sci. Technol. 43 (21) 8184-8190 (2009), doi: 10.1021/es902152t.
  • S. J. Anders, D. O. De Haan, N. Silva-Send, S. Tanaka, L. Tyner,* "Applying California╒s AB 32 targets to the regional level: a study of San Diego County greenhouse gases and reduction strategies." Energy Policy (2009), doi:10.1016/j.enpol.2009.03.009.
  • D. O. De Haan, A. L. Corrigan,* K. W. Smith,* D. R. Stroik,* J. J. Turley,* F. E. Lee,* M. A. Tolbert, J. L. Jimenez, K. E. Cordova,* G. R. Ferrell,* "Secondary organic aerosol-forming reactions of glyoxal with amino acids." Environ. Sci. Technol. 43 (8) 2818-2824 (2009), doi:10.1021/es803534f.
  • D. O. De Haan, M. A. Tolbert, J. L. Jimenez, “Atmospheric condensed-phase reactions of glyoxal with methylamine.” Geophys. Res. Lett. 36 L12201 (2009), doi:10.1029/2009GL037441.
  • Korich, Andrew; Clarke, Kristine; Wallace, David; Iovine, Peter M. “Chemical Modification of a Lignin Model Polymer via Arylboronte Ester Formation Under Mild Reaction Conditions”. Macromolecules 2009, 42(16), 5906-5908.
  • H. E. Krizner,* D. O. De Haan, J. Kua, “Thermodynamics and kinetics of methylglyoxal dimer formation: a computational study.” J. Phys. Chem. A 113 (25) 6994-7001 (2009), doi:10.1021/jp903213.
  • Boyd, M.; Wesemann, J. Eds;. "Broadening Participation in Undergraduate Research: Fostering Excellence and Enhancing the Impact."Council on Undergraduate Research; Anticipated publication date:  February 2009.
  • Porterfield, W.*; Tahmassebi, D.;" Synthesis of a Fluorescent 2'3'-Dideoxycytosine Analog, tCdd." Bioorganic & Medicinal Chemistry Letters 19, 111-113 (2009).
  • Kua, J.; *Gyselbrecht, C. R;. "Favoring heterotrimeric boroxine formation using an internal Lewis base: A computational study.” J. Phys. Chem. A, 112, 9128-9133 (2008).
  • Wallace, D.M.; Brauner, N.; Niceswanger, W.; Iovine, P.M. “Improved Synthesis and Chemical Modification of a ?-O-4 Type Artificial Lignin Polymer,” Polymer Preprints (American Chemical Society, Division of Polymer Chemistry), (2008),?49(2),?725-726.
  • Mitchell R. Malachowski, Ashraf S. Kasto, Mark E. Adams, Arnold L. Rheingold, Lev N. Zakharov, Lawrence D. Margerum, Matthew Greaney, "Copper(II) Complexes of a Biphenyl-based Ligand: Tuning the Needs of the Metal with those of the Ligand," Polyhedron, 28, 393-397, 2009.
  • 23. Mitchell R. Malachowski, Mark E. Adams, Daniel Murray, Ryan White, Nadia Elia, Arnold L. Rheingold, Lev. N. Zakharov and Richard S. Kelly, "Copper(II) Complexes of Bidentate Ligands Containing Nitrogen and Sulfur Donors," Inorganica Chimica Acta, 362, 1247-1252, 2009.
  • Iovine, P. M.; *Gyselbrecht, C. R.; *Perrtu, E. K.; *Klick, C.; *Neuwelt, A.; *Loera, J.; *DiPasquale, A. G.; Rheingold, A. L.; Kua, J. "Hetero-arylboroxines: The first rational synthesis, x-ray crystallographic and computational analysis," J. Dalton Trans. 3791-3794 (2008).
  • Kua, J.; *Hanley, S. W.; De Haan, D. O.; "Thermodynamics and kinetics of glyoxal formation: A computational study," J. Phys. Chem. A, 112, 66-72 (2008).
  • *Pfaff, D.; Clarke, K.; Geierstanger, B.H.; *Parr, T.; *Cole, J.; Tahmassebi, D.C.; Dwyer, T.J. “Solution Structure of a DNA Duplex Containing a Guanine-Difluorotoluene Pair: A Wobble Pair Without Hydrogen Bonding?" J. Am. Chem. Soc., 130 (14), 4869-4878 (2008).
  • *Corrigan, A.L.; *Hanley, S.W.; De Haan, D.O. “Uptake of glyoxal by organic and inorganic aerosol,” Environ. Sci. Technol. 42 (12) 4428-4433 (2008).
  • Pearson, W.H.; Lin, S.; Iovine, P.M. “3-Pyridyl-tri(4-fluorophenyl)boroxine,” Acta Crystallographica Section E: Structure Reports Online, E64, o235-o235 (2008).
  • Harned, T.; Kalous, O.; *Neuwelt, A.; *Loera, J.; Neuwelt, E.; Iovine, P.M.; Reynolds, “Sodium Thiosulfate (STS) Administered Six Hours After Cisplatin Does Not Compromise Anti-Neuroblastoma Activity,” C.Clin Cancer Res, 14, 533-540 (2008).
  • Grant, C. V.; Sit, S. -L.; De Angelis, A. A.; Khuong, K. S.; Plesniak, L. A.; Opella, S. J., "An efficient 1H/31P double- resonance solid-state NMR probe that utilizes a scroll coil”, J. Magn. Reson. 188, 279-284 (2007).
  • Herrinton, T. R. , J. Chem.  Ed., 84(9) ,1427 (2007).
  • Matsuda, S.; Fillo, J. D.*; Henry, A. A.; Wilkens, S. J.; Dwyer, T. J.;   Wemmer, D. E.; Spraggon, G.; Geierstanger, B. H.; Schultz, P. G.;   Romesberg, F. E.; "Unnatural Base Pair Structure-Activity   Relationships”, J. Am. Chem. Soc. 129, 10466-10473 (2007) . 
  • Tahmassebi, D. C.; Williamson, J., "Balancing teaching and research in obtaining a faculty position at a predominantly undergraduate   institution", Chemical Biology, 2(8), 521-524 (2007).
  • Chen, J.; Russo, R.; Chao, W.; Margerum, L. D.; Malachowski, M. R.; White, R.*; Thawley, Z.*; Thayer, A.*; Rheingold, A. L.; Zakharov, L. N., "Synthesis, Structure, Redox Properties and Azide Binding for a Series of Biphenyl-Based Cu(II) Complexes," J. Chem. Soc., Dalton Trans., 2571, (2007). 
  • Kua, J.; Gyselbrecht, C.R., "Thermodynamics and kinetics of nethylboroxine-amine adduct formation: A computational  study", J. Phys. Chem. A 111, 4759- 4766 (2007). 
  • Harned, T.; Kalous, O.; Neuwelt, A.*; Loera, J.*; Neuwelt, E.; Iovine P. M.; Reynolds, C. P., “Sodium Thiosulfate (STS) Administered Six   Hours After Cisplatin Does Not Compromise Anti-Neuroblastoma   Activity”, Proc. Amer. Assoc. Cancer Res., 48, 1172 (2007).
  • Tracy A. Mitchell*, Finocchio, D., and Kua, J., "Predicting the stability of hypervalent molecules" J. Chem. Educ. 84, 629-634 (2007).
  • Kua, J. and Keaton Tomlin*, "Computational study of multiple- decker sandwich and rice-ball structures of neutral titanium-benzene clusters" J. Phys. Chem. A  110, 11988-11994 (2006).
  • Kirsten W. Loeffler*, Charles A. Koehler*, Nichole M. Paul*, and   De Haan,D.; "Oligomer Formation in Evaporating Aqueous   Glyoxal and Methyl   Glyoxal Solutions" Environ. Sci. Technol., 40(20)   6318-6323 (2006).
  • Cristina M. Sandoval*, Bernhard H. Geierstanger , Satoshi Fujimura,    Calvin Balatbat*, Taylor Williams*, Julio de Unamuno*, Jennifer A.    Whiles-Lillig, Lisa M. Ellerby , H. Michael Ellerby, Patricia Jennings  and Plesniak, L. "Structural Evaluation of a Novel Pro-apoptotic    Peptide Coupled to CNGRC Tumor Homing Sequence by    NMR"Chemical Biology and Drug Design,  67(6), 383-450 (2006). 
  • Iovine, P.;, Matthew N. Fletcher*, and Shirley Lin.  "Condensation of Arylboroxine Structures on Lewis Basic Copolymers as a Noncovalent Strategy toward Polymer Functionalization" Macromolecules 39(19), 6324-6326 (2006).
  • Kua, J.; Fletcher, M. N.*; Iovine, P. M. “Effect of para-substituents and solvent polarity on the formation of triphenylboroxine-amine adducts.”  J. Phys. Chem. A, 110, 8158-8166, (2006). 
  • Dwyer, T.J.; Fillo, J.D.* “Assaying alpha-Dicarbonyl Compounds in Wine using a Complementary GC-MS, HPLC and Visible Spectrophotometric Analysis”  J. Chem. Ed., 83(2); 273-276, (2006).
  • Wong, C. F.; Kua, J.; Zhang, Y.; Straatsma, T.; McCammon, J. A. “Molecular docking of balanol to snapshots of Protein Kinase A” Protens: Structure, Function, Bioinformatics, (2005) 61, 850-858.
  • W. P. Hastings*, C. A. Koehler*, E. L. Bailey* and De Haan, D. .  “Secondary Organic Aerosol Formation by Glyoxal Hydration and Oligomer Formation: Humidity Effects and Equilibrium Shifts during Analysis,” Environ. Sci. Technol.  39, (22) 8728-8735 (2005) .
  • D.L Murphy, Malachowski, M.R. C.F. Campana, S.M. Cohen, "A Chiral, heterometallic metal-organic framework derived from a tris(chelate) coordination compound," Chem. Comm., 5506-5508, 2005. 
  • Perttu, Emily K*; Arnold, Matthew*; Iovine, P.M "The Synthesis and Characterization of Phenylacetylene Tripodal Compounds Containing Boroxine Cores" Tetrahedron Lett. 2005, 46 (50), 8753-8756.
  • Kua, J.; Iovine, P. M. “Formation of para-substituted triphenylboroxines: A computational study”  J. Phys. Chem. A, 2005, 109, 8939-8943.
  • C. A. Koehler*, J. D. Fillo*, K. A. Ries, J. T. Sanchez and De Haan, D.  “Formation of secondary organic aerosol by reactive condensation of furandiones, aldehydes, and water vapor ontoinorganic aerosol seed particles,” Environ. Sci. Technol.  37, (19) 5064-5072 (2004) doi# 10.1021 es034672b. 
  • Zhang, Q.; Dwyer, T. J.; Tsui, V.; Case, D. A.; Cho, J.; Dervan, P. B.; Wemmer, D. E., “NMR Structure of a Cyclic Polyamide-DNA Complex”, J. Am. Chem. Soc., 25, 7958-7966 (2004).
  • Sara R. Halper, Malachowski, M. R. , Heather M. Delaney and Seth M. Cohen, “Heteroleptic Copper Dipyrromethene Complexes: Synthesis, Structures, and Coordination Polymers,” Inorganic Chemistry, 43, 1242, 2004. 
  • Plesniak, L. Jonathan I. Parducho*, Angie Ziebart*, Bernhard H. Geierstanger, Jennifer Whiles, Guiseppe Melacini, & Patricia A. Jennings.  Orientation and Helical Conformation of a Tissue Specific Hunter-KillePeptide in Micelles. (2004)  Protein Science. 13:1988-96.
  • Boyd, M. K.; Zopp,G.;"Organic Photochemistry,"Annu. Rep. Prog. Chem., Section B: Org, Chem., 2004, 100, 351.
  • Bolender, J.; Richardson, F. “Chirality-Dependent Interactions between Molecular Propeller Structures in Solution.  Chiral Recognition and Discrimination Processes Modulated by Temperature and Incremental Changes in Structural Chirality.” Biophysical Chemistry, 105 (2003) 293 - 322. 
  • J. D. Fillo*, C. A. Koehler*, T. P. Nguyen*, De Haan, D. , B. A. Gilbert and K. P. Flinn.  “Simulating secondary organic aerosol activation by condensation of multiple organics on seed particles,” Environ. Sci. Technol. 37 (20) 4672-4677 (2003)  doi# 10.1021 es034110s.
  • Lowery, L. ; Plesniak, L. .  Some Like It Cold:  A    Computer- Based Laboratory Introduction to Sequence and Tertiary    Structure Comparison of  Cold- Adapted Lactate Dehydrogenases    using Bioinformatics Tools.  (2003) Journal of Chemical Education. 80:   1300-1302  http://jchemed.chem.wisc.edu/ .
  • Plesniak, L. and Ellis Bell.  Teaching Proteomics. (2003) 31:127- 30. http://www.bambed.org/.
  • Aguirre, G.; Somanathan, R.; Hellberg, L. H.; Dwyer, T. J.; North, R., "N-Alkenyl Amide Rotational Barriers by 2D EXSY NMR", Magn. Reson. Chem. 41, 131 (2003).
  • Kua, J., Zhang, Y.; Eslami, A. C.; Butler, J. R*.; McCammon, J. A. “Studying the roles of W86, E202, Y337 in binding of acetylcholine to acetylcholinesterase using a combined molecular dynamics and multiple docking approach” Prot. Sci., (2003) 12, 2675-2684. 
  • Malachowski, M., “A Day in the Life of CUR,” President’s Column, Council on Undergraduate Research Quarterly, 23, 106, 2003.
  • Malachowski, M., “A Research Across the Discipline Movement,” chapter in “Undergraduate Research,” edited by Marilyn Kinkead, Jossey-Bass series on higher education, 2003.
  • Malachowski, M., “Research Across the Curriculum,” President’s Column, Council on Undergraduate Research Quarterly, 23, 152, 2003.
  • Mary K. Boyd and Garrett M. Zopp, "Organic Photochemistry,"Annu. Rep. Prog. Chem., Section B: Org, Chem., 2003, 99, 396.
  • Mary K. Boyd and Garrett M. Zopp, "Organic Photochemistry,"Annu. Rep. Prog. Chem., Section B: Org, Chem., 2002, 98, 543.
  • Michael P. Coleman and Mary K. Boyd, "S-Pixyl Analogs as Photocleavable Protecting Groups for Nucleosides," J. Org. Chem., 2002, 67, 7641.
  • James P. Bolender and Michel A. Boudrias, “Field Research at the Core of an Interdisciplinary Science Course.” Council for Undergraduate Research – Quarterly, 22 (2002) 180-185. 
  • James P. Bolender, Andrew Meyers*, Joseph Cordaro*, and Ryan S. Ries*, " Chiral Recognition Phenomena Probed by Steady-State Luminescence Measurements: Stern-Volmer Analysis of Chiral Discriminatory Behavior " Chirality 14 (2002) 456-464.
  • Martha.L. Medina*, Barbara S. Chapman, James P. Bolender and Leigh A. Plesniak.  Transient Vesicle Leakage Initiated by a Synthetic Apoptotic Peptide Derived from the Death Domain of Neurotrophin Receptor, p75NTR.  (2002)  Journal of Peptide Research. 59 (4):  149-158.  
  • Leigh A. Plesniak, Yuki Horiuchi, Daniel Sem, David Meinenger, Linda Stiles, Jennifer Shaffer, Patricia A. Jennings, and Joseph A. Adams.  Probing the Nucleotide Binding Domain of Osmoregulator EnvZ Using Fluorescent Nucleotide Derivatives.  (2002) Biochemistry.  41: 876-82.
  • Gao, J.; Strassler, C.; Tahmassebi, D.; Kool, E.T.  “Libraries of Composite Polyfluors Built from Fluorescent Deoxyribosides”,  J.  Am. Chem. Soc (Communication). 2002 124(39) 11590-11591.
  • O’Neill, B.M.*; Ratto, J.E.*; Good, K.L.*; Tahmassebi, D.C.; Helquist, S.A.; Morales, J.C.; Kool, E.T.  “A Highly Effective Nonpolar Isostere of Deoxyguanosine:  Synthesis, Structure, Stacking, and Base Pairing”,  J. Org. Chem. 2002, 67, 5869-5875.
  • Hong Du and Mary K. Boyd, "The 9-Xanthenylmethyl Group: A Novel Photocleavable Protecting Group for Amines," Tetrahedron Lett. 2001, 42, 6645,
  • Guckian, K. M.; Schweitzer, B. A.; Ren, R. X.-F.; Sheils, C. J.; Tahmassebi, D. C.; Kool, E. T. “Factors Contributing to Aromatic Stacking in Water:  Evaluation in the Context of DNA”, J. Am. Chem. Soc. 2000, 122, 2213. 
  • Ronald M. Supkowski, James P. Bolender, Wendy D. Smith, Lewis E.L. Reynolds, and William DeW. Horrocks, Jr. “Lanthanide Ions as Redox Probes of Long-Range Electron Transfer in Proteins.”  Coord. Chem. Rev., 185-186 (1999) 307-319.
  • De Haan, D. , T. Brauers, K. W. Oum, J. Stutz, T. Nordmeyer and B. J. Finlayson-Pitts.  “Heterogeneous chemistry in the troposphere:  experimental approaches and applications to the chemistry of sea salt particles.” International Reviews of Physical Chemistry 18 (3) 343-385 (1999) .
  • Malachowski, M., Mark Adams*, Nadia Elia*, Arnold Rheingold and Richard Kelly,  “Enforcing Geometrical Constraints on Metal Complexes using Biphenyl-based Ligands:  Spontaneous Reduction of Copper(II) by Sulfur-Containing Ligands,” Journal of the Chemical Society, Dalton Transactions. 2177, 1999.
  • Malachowski, M., Nancy Mills, “CUR Institutes: A New Model for Supporting Research with Undergraduates,” Journal of Chemical Education, 76, 1320, 1999.      
  • Coleman, M. ; Boyd, M.; "Recent Noteworthy Articles in the Area of Organic Photochemistry,"Inter-American Photochemical Society Newsletter, 1999, 22, 21.
  • Coleman, M. ; Boyd, M.;"The S-Pixyl Group: An Efficient Photocleavable Protecting Group for the 5'Hydroxyl Position of Nucleosides."Tetrahedron Lett. 1999, 40, 7911.